Tartiblangan o'simlik genomlari ro'yxati - List of sequenced plant genomes

Bu ketma-ket o'simlik genomlari ro'yxati to'plangan, izohlangan va nashr etilgan, keng tarqalgan genom ketma-ketliklariga ega bo'lgan o'simlik turlarini o'z ichiga oladi. O'rnatilmagan genomlar, shuningdek, organellar faqat ketma-ketliklarni o'z ichiga olmaydi. Barcha shohliklarga qarang ketma-ket genomlar ro'yxati.

Shuningdek qarang Yosunlarning ketma-ket genomlari ro'yxati.

Bryofitlar

Organizm zo'riqishBo'limDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Physcomitrella patenlari ssp. patens str. Gransden 2004 yilBryofitlarErdan ajralib chiqadigan o'simlik2008[1]
Marchantia polimorfasiBryofitlarErdan ajralib chiqadigan o'simlik225.8 Mb19,1382017[2]
Ceratodon purpureusBryofitlarErdan ajralib chiqadigan o'simlik
Anthoceros angustusBryofitlarErdan ajralib chiqadigan o'simlik

Yuqori o'simliklar (qon tomir o'simliklar)

Organizm zo'riqishBo'limDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Selaginella moellendorffiiLikopodiofitalarNamunaviy organizm2011[3][4]

Ferns

Organizm zo'riqishBo'limDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Azolla filikuloidlariPolipodiofitalarFern0,75 Gb20,2012018[5]
Salviniya bodringasiPolipodiofitalarFern0,26 Gb19,9142018[5]

Gimnospermlar

Organizm zo'riqishBo'limDolzarbligiGenom hajmiBashorat qilingan genlar soniXromosomalar yo'qTashkilotTugatish yiliMajlis holati
Picea abies (Norvegiya archa)PinalesYog'och, tonewood kabi dekorativ Rojdestvo daraxti19,6 Gb26,359[6]12Umeå o'simlik ilmiy markazi / SciLifeLab, Shvetsiya2013[7]
Picea glauca (Oq archa)PinalesYog'och, pulpa20,8 Gb14,462[6]12Institutsional hamkorlik2013[8][9]
Pinus taeda (Lobloli qarag'ay)PinalesYog'och20.15 Gb9,024[6]122014[10][11][12]N50 iskala hajmi: 66.9 kbp
Pinus lambertiana (Shakar qarag'ay)PinalesYog'och; qarag'aylar orasida eng katta genomlar bilan;

eng katta qarag'ay turlari

31 Gb13,936122016[6]61.5X ketma-ketlik qamrovi, foydalanilgan platformalar:

Hiseq 2000, Hiseq 2500, GAIIx, MiSeq

Ginkgo bilobaGinkgoales11,75 Gb41,8402016[13]N50 iskala hajmi: 48,2 kbp
Pseudotsuga menziesiiPinales16 Gb54,830132017[14]N50 iskala hajmi: 340,7 kbp
Gnetum monatumGnetales4.07 Gb27,4912018[15]
Larix sibiricaPinales12.34 Gb / s2019[16]6440 bp dan N50 iskala
Abies albaPinales18.16 Gb94,2052019[17]14,051 bp dan N50 iskala

Angiospermlar

Amborellalar

Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Amborella trichopodaAmborellaceaeBazal angiosperm2013[18][19]

Eudicots

Proteallar
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Nelumbo nucifera (muqaddas lotus)NelumbonaceaeBazal eudikot929 Mb2013[20]38,8 kbp quvvatdagi N50 va 3,4 Mb.lik N50 iskala
Ranunkulales
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Aquilegia coeruleaRanunculaceaeBazal eudikotNashr qilingan[21]
Troxodendrallar
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Troxodendron aralioidlari (G'ildirak daraxti)TroxodendrallarIkkilamchi ksilemaga ega bo'lgan bazal evdiot, tomirlar elementlarisiz1.614 Gb35,328Guansi universiteti2019[22]19 ta xromosomaga to'g'ri keladigan 19 ta iskala
Karyofillalar
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Beta vulgaris (qand lavlagi)ChenopodiaceaeO'simlik o'simlik714–758 Mb27,4212013[23]
Chenopodium quinoaChenopodiaceaeO'simlik o'simlik1.39-1.50 Gb44,7762017[24]3,486 iskala, 3,84 Mb iskala N50, yig'ilgan genomning 90% 439 ta iskala tarkibiga kiradi[24]
Amaranthus hypocondriacusAmaranthaceaeO'simlik o'simlik403.9 Mb23,8472016[25]16,9 dan 38,1 Mb gacha bo'lgan 16 ta yirik iskala. Assambleyaning N50 va L50 mos ravishda 24,4 Mb va 7 ni tashkil etdi.[26]
Carnegiea giganteaKaktasiyalarYovvoyi o'simlik1,40 Gb28,2922017[27]57,409 iskala, 61,5 kb dan N50 iskala[27]
Suaeda aralocaspicaAmaranthaceaeTo'liq C ni bajaradi4 individual hujayralar ichidagi fotosintez (SCC)4)467 Mb29,604ABLife Inc.2019[28]4.033 iskala, N50 iskala uzunligi 1.83 Mb
Simmondsia chinensis (jojoba)SimmondsiaceaeMoyli ekinlar887 Mb23,4902020[29]994 ta iskala, N50 iskala uzunligi 5,2 Mb
Rosidlar
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniXromosomalar yo'qTashkilotTugatish yiliMajlis holati
Sklerokarya birrea

(Marula)

AnakardiyaOziq-ovqat uchun ishlatiladi18,3972018[30][31]
Betula pendula (kumush qayin)BetulaceaeBoreal o'rmon daraxti, o'rmon biotexnologiyasi uchun namuna435 Mb[32]28,39914Xelsinki universiteti2017[32]454 / Illumina / PacBio. O'rnatish hajmi 435 Mbp. Contig N50: 48,209 bp, iskala N50: 239,796 bp. Yig'ilishning 89% 14 psevdomolekulaga moslangan. Bundan tashqari 150 ta qayin shaxslari ketma-ketlikda.
Betula nana (mitti qayin)BetulaceaeArktik buta450 MbQMUL / SBCS2013[33]
Aethionema arabicumBrassicaceaeXochga mixlangan genomlarning qiyosiy tahlili2013[34]
Arabidopsis lyrata ssp. lira shtamm MN47BrassicaceaeNamunaviy o'simlik206,7 Mb32,670[35]82011[35]ABI 3730XL kapillyar sekvensiyalarida tahlil qilingan 8.3X ketma-ketlik qamrovi
Arabidopsis talianasi Ekotip: KolumbiyaBrassicaceaeNamunaviy o'simlik135 Mb27,655[36]5AGI2000[37]
Barbarea vulgaris

G turi

BrassicaceaeIxtisoslashgan metabolitlar va o'simliklarni himoya qilish uchun namunaviy o'simlik167,7 Mb25,35082017[38]Illumina GA II texnologiyasi bilan 66,5 X qoplama
Brassica rapa ssp. pekinensis (xitoy karamiga) qo'shilish Chiifu-401-42BrassicaceaeTurli xil ekinlar va namunali organizm485 Mb / s41.174 (genom uch marta takrorlangan)10Brassica rapa Genome Sequencing Project Consortium2011[39]Illumina GA II texnologiyasi asosida yaratilgan qisqa o'qish ketma-ketligini 72 marta qamrab olish
Brassica napus (Moyli zo'rlash yoki kolza urug'i) Evropaning qishki moyli urug'i 'Darmor-bzh'BrassicaceaeO'simliklar1130 Mb101,04019Institutsional hamkorlik2014[40]454 GS-FLX + Titanium (Roche, Bazel, Shveytsariya) va Sanger ketma-ketligi. 79 Gb Illumina (San-Diego, Kaliforniya) HiSeq ketma-ketligi ishlatilgan.
Capsella qizilchaBrassicaceaeArabidopsis taliananing yaqin qarindoshi130 Mb26,521JGI2013?[41] 2013[42]
Kardamin hirsuta (tukli achchiq siqish) shtamm "Oksford"BrassicaceaeO'simliklar rivojlanishi evolyutsiyasini o'rganish uchun namunaviy tizim198 Mb29,4588Maks Plank nomidagi o'simliklarni etishtirish ilmiy-tadqiqot instituti, Kyoln, Germaniya2016[43]Miltiqni ketma-ketlik strategiyasi, Illumina HiSeq-dan (jami 52 Gbp xom o'qish) juftlashtirilgan o'qishni (197 × yig'ilgan ketma-ketlik qamrovi) va juftlik o'qishni (66 × yig'ilgan) birlashtirgan.
Eruca sativa (salat raketasi)BrassicaceaeOziq-ovqat uchun ishlatiladi851 Mb / s45,438O'qish universiteti2020[44]Illumina MiSeq va HiSeq2500. PCR bepul juftlashtirilgan uchi va uzun juftliklarini ketma-ketligi va yig'ilishi. Illumina HiSeq transkriptomi ketma-ketligi (125/150 bp juftlik bilan o'qiladi).
Eritsimum xirantoidlar (chuvalchangsimon devor gullari) shtamm 'Elbtalaue'BrassicaceaeHimoya kimyosini o'rganish uchun namunaviy zavod, shu jumladan yurak glikozidlari175 Mb29,9478Boys Tompson instituti, Itaka, NY2020[45][46]39,5 Gb PacBio ketma-ketliklari (o'rtacha uzunligi 10,603 bp), bitta qatorli Illumina MiSeq ketma-ketligi (2 x 250 bp juftlashgan uchi), Phase Genomics Hi-C iskala, PacBio va Illumina transkriptomi ketma-ketligi
Eutrema salsugineumBrassicaceaeArabidopsisning yuqori tuzga chidamliligi bilan qarindoshi240 Mb26,351JGI2013[47]
Eutrema parvulumBrassicaceaeXochga mixlangan genomlarning qiyosiy tahlili2013[34]
Leavenworthia alabamicaBrassicaceaeXochga mixlangan genomlarning qiyosiy tahlili2013[34]
Sisymbrium irioBrassicaceaeXochga mixlangan genomlarning qiyosiy tahlili2013[34]
Thellungiella parvulaBrassicaceaeArabidopsisning yuqori tuzga chidamliligi bilan qarindoshi2011[48]
Nasha sativa (kanop)NashaKanop va marixuana ishlab chiqarishtaxminan 820 MbTranskriptomni yig'ish va klasterlash asosida 30.0742011[49]Illumina / 454

iskala N50 16.2 Kbp

Carica papaya (Papaya)KarikaturaMeva hosil372 Mb28,6292008[50]contig N50 11kbp

iskala N50

1Mb

umumiy qamrov ~ 3x (Sanger)

92,1% noyob xaritalar tuzilgan

235Mbp quvvatga ega (bundan 161Mbp ga yo'naltirilgan)

Casuarina equisetifolia

(Avstraliya qarag'ay)

Casuarinaceaebonsai mavzusi300 Mb29,8272018[51]
Kalanchoë fedtschenkoi Raym.-Hamet va H. PerrierKalanchoeCrassulaceaeEudikotlarda majburiy CAM turlari uchun molekulyar genetik model256 Mb30,964342017[52]~ Illumina MiSeq platformasi yordamida yaratilgan ~ 70 × juftlik va ~ 37 × juftlik o'qishlari.
Rhodiola crenulata (Tibet dorivor o't)CrassulaceaeDori-darmon va oziq-ovqat uchun ishlatiladi344,5 Mb35,5172017[53]
Citrullus lanatus (tarvuz)CucurbitaceaeSabzavot ekinlaritaxminan 425 Mb23,440BGI2012[54]Illumina

qamrovi 108,6x

contig N50 26.38 kbp

Iskala N50 2.38 Mbp

genom 83,2% bilan qoplangan

~ 97% EST xaritalari

Cucumis melo (Mushkmel) DHL92CucurbitaceaeSabzavot ekinlari450 Mb27,4272012[55]454

13,5 marta qamrab olish

contig N50: 18.1kbp

iskala N50: 4.677 Mbp

WGS

Cucumis sativus (bodring) 9930 raqamli "uzoq xitoylik" chiziqli chiziqCucurbitaceaeSabzavot ekinlari350 Mbp (Kmer chuqurligi) 367 Mbp (oqim sitometriyasi)26,6822009[56]contig N50 19.8kbp

iskala N50 1,140kbp

umumiy qamrov ~ 72,2 (Sanger + Ilumina)

96,8% o'ziga xos bo'lmagan xaritalar tuzilgan

Genomning 72,8% langar tashlagan

Cucurbita argyrosperma

(Kumush urug 'go'shti)

CucurbitaceaeSabzavot ekinlari228,8 Mb28,29820Meksika milliy avtonom universiteti2019[57]contig N50 463 kbp

iskala N50 620 kbp

umumiy qamrov hajmi ~ 151x (PacBio + Illumina)

Siraitia grosvenorii

(Monk mevasi)

CucurbitaceaeXitoy tibbiyoti / tatlandırıcı456,5 Mb30,565Anhui qishloq xo'jaligi universiteti2018[58]
Hevea brasiliensis (rezina daraxt)Euphorbiaceaejinsning iqtisodiy jihatdan eng muhim a'zosi Xeviya2013[59]
Jatropha curcas PalavanEuphorbiaceaebio-dizel ekinlari2011[60]
Manihot esculenta (Kassava)EuphorbiaceaeGumanitar ahamiyatga ega~ 760 Mb30,666JGI2012[61]
Ricinus communis (Kastor loviya)EuphorbiaceaeMoyli ekinlar320 Mb31,237JCVI2010[62]Sanger qamrovi ~ 4.6x contig N50 21.1 kbp iskala N50 496.5kbp
Ammopiptanthus nanusFabaceaeFaqat doimiy yashil keng bargli buta889 Mb37,1882018[63]
Cajanus cajan (Kabutar no'xat) var. AshaFabaceaeModel dukkakli ekinlar2012[64][65]
Arachis duranensis (Genom diploid yovvoyi eman) qo'shilish V14167FabaceaeYong'oqning yovvoyi ajdodi, moyli va donli dukkakli ekinlar2016[66]Illumina 154x qamrovi, kontig N50 22 kbp, iskala N50 948 kbp
Arachis ipaensis (B genomi diploid yovvoyi eman) qo'shilish K30076FabaceaeYong'oqning yovvoyi ajdodi, moyli va donli dukkakli ekinlar2016[66]Illumina 163x qoplamasi, kontur N50 23 kbp, iskala N50 5,343 kbp
Cicer arietinum (nohut)Fabaceaeto'ldirish2013[67]
Cicer arietinum L. (nohut)Fabaceae2013[68]
Dalbergia odorifera (xushbo'y atirgul)FabaceaeYog'ochdan tayyorlangan mahsulot (yurak daraxti) va xalq tabobati653 Mb30,31010Xitoy o'rmon xo'jaligi akademiyasi2020[69]Contig N50: 5.92Mb

Iskala N50: 56.1 6Mb

Faidherbia albida

(Olma halqali akatsiya)

FabaceaeAsalarilarni ko'paytirish uchun Saheldagi muhim narsa28,9792018[70][30]
Glycine max (soya) var. Uilyams 82FabaceaeOqsil va yog'li hosil1115 Mb46,4302010[71]Contig N50: 189.4kbp

Iskala N50: 47.8Mbp

Sanger qamrovi ~ 8x

WGS

955.1 Mbp yig'ildi

Lablab purpureus

(Hyacinth Bean)

FabaceaeOdam iste'mol qilish uchun ekin20,9462018[30][72]
Lotus japonicus (Qushlarning oyoq uchi)FabaceaeModel dukkakli ekinlar2008[73]
Medicago trunkatula (Barrel Medic)FabaceaeModel baklagiller2011[74]
Phaseolus vulgaris (oddiy loviya)FabaceaeLoviya520 Mb / s31,638JGI2013?[75]
Vigna subterranea

(Bambara yong'og'i)

Fabaceaeemanga o'xshash31,7072018[76][30]
Kastanea mollissima (Xitoy kashtan)Fagaceaeetishtirilgan yong'oq785.53 Mb36,479Pekin qishloq xo'jaligi universiteti2019[77]Illumina: -42,7 ×

PacBio: -87 ×

contig N50: 944,000bp

Carya illinoinensis

Pecan

Junglandaceaeturli retseptlarda gazaklar651.31 Mb2019[78]
Juglans regia (Fors yong'og'i)Junglandaceaeetishtirilgan yong'oq540 MbXitoy o'rmon xo'jaligi akademiyasi2020[79]
Juglans sigillata (Temir yong'oq)Junglandaceaeetishtirilgan yong'oq536.50 MbNankin o'rmon xo'jaligi universiteti2020[80]Illumina + Nanopore + bionano

iskala N50: 16.43 Mb, tutash N50: 4.34 Mb

Linum usitatissimum (zig'ir)LinaceaeO'simlik~ 350 Mb / s43,384BGI va boshq.2012[81]
Bombax ceiba

(qizil ipak paxta daraxti)

Malvaceaepaxta kabi oq tolali kapsulalar895 Mb2018[82]
Durio zibethinus (Durian)MalvaceaeTropik mevali daraxt~ 738 Mb2017[83]
Gossypium raimondiiMalvaceaeTetraploid paxtaning taxminiy avlodlaridan biri2013?[84]
Theobroma kakao (kakao daraxti)MalvaceaeXushbo'y hosil2010[85][86]
Theobroma kakao (kakao daraxti) Rezyume. Matina 1-6MalvaceaeEng keng tarqalgan kakao turi2013[87]
Theobroma kakao (200 ta qo'shilish)Malvaceaekakaoning uy sharoitiga keltirish tarixi2018[88]
Azadirachta indica (neem)MeliaceaeAn'anaviy tibbiyotda ishlatiladigan terpenoidlar, shu jumladan azadirachtin biopestitsidi, manbai364 Mb~20000GANIT laboratoriyalari2012[89] va 2011 yil[90]Illumina GAIIx, 452028bp.lik N50 iskala, Shoot, Root, Leaf, Flower and Seed-dan transkriptom ma'lumotlari.
Moringa oleifera

(Horseradish daraxti)

Moringaceaean'anaviy o'simlik tibbiyoti18,4512018[91][30]
Evkalipt grandislari (Atirgul saqichi)MyrtaceaeElyaf va yog'ochdan tayyorlangan o'simlik691.43 Mb2011[92]
Evkalipt pauciflora (Qor saqichi)MyrtaceaeElyaf va yog'ochdan tayyorlangan o'simlik594.87 MbANU2020[93]Nanopore + Illumina; contig N50: 3.23 Mb
C. katayensis

(Xitoy xikori)

Rosaceaemevali hosil706.43 Mb2019[78]
Eriobotrya japonica (Loquat)RosaceaeMeva daraxti760.1 Mb45,743Shanxay qishloq xo'jaligi fanlari akademiyasi2020[94]Illumina + Nanopore + Hi-C

17 xromosomalar, iskala N50: 39.7 Mb

Fragaria vesca (yovvoyi qulupnay)RosaceaeMeva hosil240 Mb34,8092011[95]iskala N50: 1,3 Mbp

454 / Illumina / qattiq

39x qamrov

WGS

Malus domestica (olma) "Oltin mazali"RosaceaeMeva hosil~ 742,3 Mb57,3862010[96]contig N50 13.4 (kbp ??)

iskala N50 1,542,7 (kbp ??)

umumiy qamrov hajmi ~ 16.9x (Sanger + 454)

71,2% langar tashlagan

Prunus amigdalus (bodom)RosaceaeMeva hosil2013?[97]
Prunus avium (shirin gilos) Rezyume. StellaRosaceaeMeva hosil2013?[97]
Prunus mumi (Xitoylik olxo'ri yoki yapon o'rik)RosaceaeMeva hosil2012[98]
Prunus persica (shaftoli)RosaceaeMeva hosil265 Mb27,8522013[99]Sanger qamrovi: 8.47x

WGS

taxminan 99% EST xaritasi tuzilgan

Psevdomolekulalarda 215.9 Mbp

Pyrus bretschneideri (ya armut yoki xitoy oq nok) Rezyume. DangshansuliRosaceaeMeva hosil2012[100]
Pyrus Communis (Evropa noki) Rezyume. Doyenne du ComiceRosaceaeMeva hosil2013?[97]
Rubus occidentalis

(Qora malina)

RosaceaeMeva hosil290 Mb2018[101]
Sitrus klementina (Klementin)RutaceaeMeva hosil2013?[102]
Sitrus sinensis (Shirin to'q sariq)RutaceaeMeva hosil2013?,[102] 2013[103]
Populus trichocarpa (terak)SalicaceaeUglerod sekvestratsiyasi, namunaviy daraxt, yog'och510 Mbp (sitogenetik) 485 Mbp (qamrovi)73.013 [Fitozoma]2006[104]Iskala N50: 19,5 Mbp

Contig N50: 552,8 Kbp [fitozom]

WGS

> = 95% cDNA topildi

Populus pruinosa

(cho'l daraxti)

Salicaceaedehqonchilik va raqs479,3 Mb35,1312017[105]
Acer truncatum (binafsha zarang)SapindaceaeNervon kislotasini ishlab chiqaradigan daraxt633.28 Mb28,4382020[106]kontig N50 = 773.17 Kb; iskala N50 = 46.36 Mb
Acer yangbienseSapindaceaePopulyatsiyasi juda kichik bo'lgan o'simlik turlari110 Gb28,320132019[107]iskala N50 = 45 Mb
Dimokarpus longan (Longan)SapindaceaeMeva hosil471.88 Mb2017[108]
Xanthoceras sorbifolium Bunge (Yellowhorn)SapindaceaeMeva ekinlari504.2 Mb24,6722019[109][110]
Aquilaria sinensis (Agarwood)TimelaeaceaeXushbo'y o'tin726,5 Mb29,2032020[111]Illumina + nanopore + Hi-C, iskala N50: 88.78 Mb
Vitis vinifera (uzum) genotip PN40024Vitaceaemevali hosil2007[112]
Asteridlar
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Asclepias syriaca, (oddiy sutli o't)ApocynaceaeSutli lateks chiqadi420 Mb / s14,474Oregon shtat universiteti2019[113]80,4 × chuqurlik

N50 = 3,415 bp

Erigeron breviscapus (Xitoy o'simlik o'simliklari)AsteraceaeXitoy tibbiyoti37,5052017[114]
Helianthus annuus (kungaboqar)AsteraceaeMoyli hosil3.6 Gb52,232INRA va kungaboqar genomining ma'lumotlar bazasi[115]2017[116]N50 kontig: 13,7 kb
Lactuca sativa (sutcho'p)AsteraceaeSabzavot ekinlari2,5 Gb38,9192017[117]N50 davri: 12 kb; N50 iskala: 476 kb
Handroanthus impetiginosus, Bignoniaceae

(Pushti Ipê)

BignoniaceaeUmumiy daraxt503.7 Mb31,6682017[118]
Diospyros oleifera Cheng (Persimmon yoki Kaki)EbenaceaeMeva daraxti849.53 Mb28,580Chjetszyan universiteti & Xitoy o'rmon xo'jaligi akademiyasi2019[119] & 2020[120]Ikkala genom ham xromosoma miqyosida va 15 ta psevdoxromosomaga berilgan
Salvia miltiorrhiza Bunge

(Xitoylik qizil donishmand)

LamiaceaeKOAH uchun TCM davolash641 Mb34,5982015[121]
Callicarpa americana (Amerika go'zalligi)LamiaceaeBezak buta va hasharotlarga qarshi506 Mb32,164Michigan shtati universiteti2020[122]17 psevdomolekulalar Contig N50: 7.5Mb iskala N50: va 29.0 Mb
Menta x piperita (Yalpiz)LamiaceaeMoyli hosil353 Mb35,597Oregon shtat universiteti2017[123]
Tectona grandis

(Teak)

LamiaceaeChidamlilik va suvga chidamlilik31,1682019[124]
Utricularia gibba (qovurg'a pufagi)Lentibulariaceaegenom hajmi evolyutsiyasini o'rganishning model tizimi; yirtqich o'simlik81.87 Mb28,494LANGEBIO, CINVESTAV2013[125]Iskala N50: 80.839 Kb
Camptotheca acuminata Decne

(Xitoy baxtli daraxti)

Nissaceaesaraton kasalligini davolash uchun kimyoviy dorilar403 Mb31,8252017[126]
Devidiya daxlsizligi Baill (kaptar daraxti)NissaceaeTirik qoldiq1,169 Mb42,5542020[127]
Mimulus guttatusFrymaceaeekologik va evolyutsion genetikani o'rganishning model tizimitaxminan 430 Mb26,718JGI2013?[128]Iskala N50 = 1.1 Mbp

Contig N50 = 45,5 Kbp

Primula vulgaris (Oddiy primrose)PrimulaceaeOvqat pishirish uchun ishlatiladi474 Mb2018[129]
Solanum lycopersicum (pomidor) Rezyume. Xaynts 1706SolanaceaeOziq-ovqat mahsulotitaxminan 900 Mb34,727SGN2011[130] 2012[131]Sanger / 454 / Illumina / Solid

91 ta iskala tarkibidagi psevdomolekulalar (760Mbp, shundan 594Mbp yo'naltirilgan)

98% dan ortiq EST xaritasi

Solanum aethiopicum (Efiopiya patlıcan)SolanaceaeOziq-ovqat mahsuloti1,02 Gb / s34,906BGI2019[132]Illumina

iskala N50: 516,100bp

contig N50: 25,200 bp

∼109 × qamrov

Solanum pimpinellifolium (Smorodina pomidor)Solanaceaepomidorga eng yaqin yovvoyi2012[131]Illumina

contig N50: 5100bp

~ 40 marta qamrab olish

Solanum tuberosum (Kartoshka)SolanaceaeOziq-ovqat mahsuloti726 Mb[133]39,031Kartoshka genomini tartiblash bo'yicha konsortsium (PGSC)2011[134][135]Sanger / 454 / Illumina

79,2 marta qamrab olish

contig N50: 31,429bp

iskala N50: 1,318,511bp

Solanum commersonii (komissionerning kechasi)SolanaceaeYovvoyi kartoshka qarindoshi838 Mbp kmer (840 Mbp)37,662UNINA, UMN, UNIVR, Sequentia Biotech, CGR2015[136]Illumina

105x qamrov

contig N50: 6,506bp

iskala N50: 44,298bp

Cuscuta campestris

(dala yemi)

Solanaceaeuchun model tizimi parazit o'simliklar556 Mbp kmer (581 Mbp)44,303Axen universiteti, Yulix tadqiqot markazi, UiT Norvegiyaning Arktika universiteti, Helmholtz Zentrum Myunxen, Myunxen Texnik universiteti, Vena universiteti2018[137]iskala N50 = 1.38 Mbp
Cuscuta australis (Janubiy yem)Solanaceaeuchun model tizimi parazit o'simliklar265 Mb

kmer (273 Mbp)

19,671Kunming Botanika instituti, Xitoy Fanlar akademiyasi2018[138]iskala N50 = 5.95 Mbp

contig N50 = 3.63 Mbp

Nikotiana benthamianaSolanaceaeTamakining yaqin qarindoshica 3 Gbp2012[139]Illumina

63x qamrov

contig N50: 16,480bp

iskala N50: 89,778bp

> 93% noyob moddalar topildi

Nikotiana sylvestris (Tamaki zavodi)Solanaceaeo'rganish uchun model tizimi terpenoid ishlab chiqarish2.636 Gb / sFilipp Morris xalqaro2013[140]94 marta qamrab olish

iskala N50: 79,7 kbp

Jismoniy Nikotiana xaritasi yordamida 194kbp superscaffoldlar

Nicotiana tomentosiformisSolanaceaeTamaki nasli2.682 GbFilipp Morris xalqaro2013[140]146 marta qamrab olish

iskala N50: 82.6 kb

Jismoniy Nikotiana xaritasi yordamida 166kbp superscaffolds

Capsicum annuum (Qalapmir)

(a) cv. CM334 (b) cv. Zunla-1

SolanaceaeOziq-ovqat mahsuloti~ 3.48 Gb / s(a) 34,903

(b) 35,336

(a) 2014 yil[141]

(b) 2014 yil[142]

N50 kontig: (a) 30.0 kb (b) 55.4 kb

N50 iskala: (a) 2.47 Mb (b) 1.23 Mb

Capsicum annuum var. glabriuskulum (Chiltepin)SolanaceaeMadaniy qalampirning nasli~ 3.48 Gb / s34,4762014[142]N50 kontig: 52,2 kb

N50 iskala: 0,45 Mb

Petunya gibridasiSolanaceaeIqtisodiy ahamiyatga ega gul2011[143]

Monokotlar

Maysalar
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniTashkilotTugatish yiliMajlis holati
Setaria italica (Tulki dumi tarig'i)PakanaModel C4 metabolizm2012[144]
Aegilops tauschii (Taushning echki o'ti)Pakananon bug'doyi D-genomining naslitaxminan 4.36 Gb39,6222017[145]psevdomolekulani yig'ish
Brachypodium distachyon (binafsha soxta brom)PakanaModel monokot2010[146]
Coix lacryma-jobi L. (Ayubning ko'z yoshlari)PakanaO'simlik va tibbiyotda va bezaklarda ishlatiladi1.619 Gb39,6292019[147]
Dikantel oligosantlari (Heller rozetidagi o't)PakanaC4 turlari bilan chambarchas bog'liq bo'lgan C3 o'tlari960 MbDDPSC2016[148]
Eragrostis egri chizig'iPakanachorvachilik uchun foydali43.31 Mb56,4692019[149]
Hordeum vulgare (arpa)PakanaEkologik qabul qilish modeliIBSC2012,[150] 2017[151]
Oryza brachyantha (yovvoyi guruch)PakanaGuruchning kasallikka chidamli yovvoyi qarindoshi2013[152]
Oryza glaberrima (Afrika guruchi) var CG14PakanaG'arbiy-Afrika guruch turlari2010[153]
Oryza rufipogon (qizil guruch)PakanaAjdod Oryza sativa406 Mb37,071SIBS2012[154]Illumina HiSeq2000

100 marta qamrab olish

Oryza sativa (uzun donli guruch) ssp indicaPakanaHosil va namunali don430 Mb[155]Xalqaro guruch genomini tartiblash loyihasi (IRGSP)2002[156]
Oryza sativa (Qisqa donli guruch) ssp yaponikaPakanaHosil va namunali don430 MbXalqaro guruch genomini tartiblash loyihasi (IRGSP)2002[157]
Panicum virgatum (switchgrass)Pakanabioyoqilg'i2013?[158]
Phyllostachys edulis (moso bambuk)PakanaBambukdan tayyorlangan to'qimachilik sanoati79.90 Mb25,2252013[159] 2018[160]
Sorghum bikolor genotip BTx623PakanaO'simliktaxminan 730 Mb34,4962009[161]contig N50: 195.4kbp

iskala N50: 62.4Mbp

Sanger, 8,5 barobar qamrov

WGS

Triticum aestivum (non bug'doy)PakanaGlobal oziqlanishning 20%14,5 Gb107,891IWGSC2018[162]psevdomolekulani yig'ish
Triticum urartuPakanaNon-bug'doy A-genomining naslitaxminan 4,94 GbBGI2013[163]Takrorlanmaydigan ketma-ketlik yig'ilgan

Illumina WGS

Zea Mays (makkajo'xori) ssp mays B73PakanaDonli ekinlar2,3 Gb39,656[164]2009[165]contig N50 40kbp

iskala N50: 76kbp

Sanger, BAC uchun 4-6 marta qoplash

Pennisetum glaucum (marvarid tariq)PakanaSubmariya va Saxiliya tariq turlari~ 1,79 Gb38,5792017[166]WGS va bakterial sun'iy xromosoma (BAC) ketma-ketligi
Boshqa o'tlar
Organizm zo'riqishOilaDolzarbligiGenom hajmiBashorat qilingan genlar soniXromosomalar yo'qTashkilotTugatish yiliMajlis holati
Ananas bracteatus qo'shilish CB5BromellarYovvoyi ananas qarindoshi382 Mb27,024252015[167]Illumina-ning har xil o'lchamdagi kutubxonalarini juftlashtirilgan uchidan o'qiydigan 100 × qamrov.
Ananas comosus (L.) Merr. (Ananas), F153 va MD2 navlariBromellarKassula kislotasi metabolizmiga (CAM) ega bo'lgan iqtisodiy jihatdan eng qimmat ekin382 Mb27,024252015[167]400 × Illumina o'qiydi, 2 × molekulo sintetik uzun o'qiydi, 1 × 454 o'qiydi, 5 × PacBio bitta molekulali uzun o'qiydi va 9400 BAC.
Musa acuminata (Banan)MusaceaeZamonaviy banan navlarining A-genomi523 Mb36,5422012[168]N50 kontig: 43.1 kb

N50 iskala: 1,3 Mb

Musa balbisiana (Yovvoyi banan)MusaceaeZamonaviy banan navlarining B-genomi438 Mb36,6382013[169]N50 kontig: 7,9 kb
Calamus simplicifolius
Arecaceaetropik va subtropik mintaqalarga xos1.98 Gb51,2352018[170]
Cocos nucifera (Hindiston yong'og'i palmasi)Arecaceaeoziq-ovqat va kosmetika mahsulotlarida ishlatiladi419,67 Gb2017[171]
Daemonorops jenkinsianaArecaceaetropik va subtropik mintaqalarga xos.1,61 Gb52,3422018[170]
Feniks daktilifasi (Xurmo)ArecaceaeQurg'oqchil mintaqalarda yog'ochli hosil658 Mb28,8002011[172]N50 kontig: 6,4 kb
Elaeis guineensis (Afrika yog'i palmasi)ArecaceaeMoyli hosil~ 1800 Mb / s34,8002013[173]N50 iskala: 1,27 Mb
Spirodela polyrhiza (Katta o'rdak)AraceaeSuv o'simliklari158 Mb19,6232014[174]N50 iskala: 3.76 Mb
Phalaenopsis equestris (Schauer) Rchb.f. (Kuya orkide)OrxideyaKo'plab zamonaviy kuya orkide navlari va duragaylarining ota-onalari.

Bilan ekish kassula kislotasining metabolizmi (CAM).

1600 Mb / s29,4312014[175]N50 iskala: 359,115 kb

Ketma-ketlikni e'lon qiluvchi press-relizlar

Ushbu moddaning birinchi xatboshidagi mezonlarga javob bermaslik, yuqori sifatli, nashr etilgan, yig'ilgan va ommaga taqdim etilgan deyarli to'liq ketma-ketlik. Ushbu ro'yxat ketma-ketliklar press-relizlarda yoki veb-saytlarda e'lon qilinadigan turlarni o'z ichiga oladi, ammo DOI-ga ega bo'lgan baholash jurnalida ma'lumotlarga boy nashrda emas.

Shuningdek qarang

Tashqi havolalar

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